1 Response_reg#1
5-113 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:5:2.27e-24:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA30_RS13385
Response regulator OmpR family
Anaerostipes hadrus · GCF_001405635
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405635#ARA30_RS13385Stable P2CS identifier used across views.
GenomeGCF_001405635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 222 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:147:3.64e-27:222:77:77- Raw architecture: Response_reg:5:2.27e-24:113:110:111#Trans_reg_C:147:3.64e-27:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405635::NZ_CYXY01000021.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30039-30707Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852571_02753RefSeq proteinWP_055073375.1
Context group ID
GCF_001405635::NZ_CYXY01000021.1::G00025Context members
ARA30_RS13385
Partner locus tags
ARA30_RS13385
Partner old locus tags
ERS852571_02753
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055073375.1Primary protein accession used for annex mappings.
UniProt accessionA0A173UJD4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173UJD4_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA30_RS13385Primary locus identifier stored in the genes table.
Old locus tagERS852571_02753Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXY01000021.1Sequence record reported by the local genomic context database.
Genomic interval30 039-30 707 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 039-30 707 ntGCF_001405635::NZ_CYXY01000021.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405635::NZ_CYXY01000021.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXY01000021.1All displayed genes belong to this local TCS context.
Neighborhood span30 039-30 707 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 039 nt30 707 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA30_RS13385GCF_001405635#ARA30_RS13385
RROmpRCurrent focus
30 039-30 707 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405635#ARA30_RS13385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641694
Simplified PFAM architecture for RROC_1641694
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1641694
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_001405635#ARA30_RS13385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001405635
Assembly14207_7#82 · Scaffoldhaploid
Genome composition3 159 004 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 49 · HK 23 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key