1 Response_reg#1
8-117 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:8:1.04e-35:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB75_RS11520
Response regulator OmpR family
Roseburia faecis · GCF_001405615
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405615#ARB75_RS11520Stable P2CS identifier used across views.
GenomeGCF_001405615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 239 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 31.8% of protein
Raw token
Trans_reg_C:156:4.87e-22:231:76:77- Raw architecture: Response_reg:8:1.04e-35:117:111:111#Trans_reg_C:156:4.87e-22:231:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405615::NZ_CYXV01000010.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45694-47471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852420_02341RefSeq proteinWP_055068580.1
Context group ID
GCF_001405615::NZ_CYXV01000010.1::G00035Context members
ARB75_RS11515ARB75_RS11520
Partner locus tags
ARB75_RS11515ARB75_RS11520
Partner old locus tags
ERS852420_02340ERS852420_02341
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068580.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WW98Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WW98_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB75_RS11520Primary locus identifier stored in the genes table.
Old locus tagERS852420_02341Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXV01000010.1Sequence record reported by the local genomic context database.
Genomic interval46 752-47 471 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 694-47 471 ntGCF_001405615::NZ_CYXV01000010.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405615::NZ_CYXV01000010.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXV01000010.1All displayed genes belong to this local TCS context.
Neighborhood span45 694-47 471 nt1 778 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 694 nt47 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB75_RS11515GCF_001405615#ARB75_RS11515
HKClassic
45 694-46 755 nt · Forward (+)
ARB75_RS11520GCF_001405615#ARB75_RS11520
RROmpRCurrent focus
46 752-47 471 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS11520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0908916
Simplified PFAM architecture for RROC_0908916
PFAM domain coverage: 186 / 239 aa (77.8%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-117] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0908916
- Positioned domains: Response_reg 8-117 ; Response_reg 8-117 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS11520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001405615
Assembly13414_6#47 · Scaffoldreference genome · haploid
Genome composition3 567 818 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 100 · HK 42 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key