1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:9.9e-34:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB75_RS10355
Response regulator OmpR family
Roseburia faecis · GCF_001405615
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405615#ARB75_RS10355Stable P2CS identifier used across views.
GenomeGCF_001405615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:8.47e-34:223:77:77- Raw architecture: Response_reg:6:9.9e-34:116:112:111#Trans_reg_C:150:8.47e-34:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405615::NZ_CYXV01000008.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148508-150676Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852420_02106RefSeq proteinWP_022046475.1
Context group ID
GCF_001405615::NZ_CYXV01000008.1::G00033Context members
ARB75_RS10350ARB75_RS10355
Partner locus tags
ARB75_RS10350ARB75_RS10355
Partner old locus tags
ERS852420_02105ERS852420_02106
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022046475.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WT04Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WT04_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB75_RS10355Primary locus identifier stored in the genes table.
Old locus tagERS852420_02106Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXV01000008.1Sequence record reported by the local genomic context database.
Genomic interval149 996-150 676 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span148 508-150 676 ntGCF_001405615::NZ_CYXV01000008.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405615::NZ_CYXV01000008.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXV01000008.1All displayed genes belong to this local TCS context.
Neighborhood span148 508-150 676 nt2 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 508 nt150 676 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB75_RS10350GCF_001405615#ARB75_RS10350
HKClassic
148 508-149 995 nt · Reverse (-)
ARB75_RS10355GCF_001405615#ARB75_RS10355
RROmpRCurrent focus
149 996-150 676 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS10355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1414350
Simplified PFAM architecture for RROC_1414350
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1414350
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS10355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001405615
Assembly13414_6#47 · Scaffoldreference genome · haploid
Genome composition3 567 818 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 100 · HK 42 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key