1 HAMP#1
176-247 aa · 72 aa · 14.5% of protein
Raw token
HAMP:176:0.00000000000269:247:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB75_RS10350
Histidine kinase, Classic
Roseburia faecis · GCF_001405615
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405615#ARB75_RS10350Stable P2CS identifier used across views.
GenomeGCF_001405615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 495 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
272-339 aa · 68 aa · 13.7% of protein
Raw token
HisKA:272:0.00000000000000284:339:68:643 HATPase_c#3
384-491 aa · 108 aa · 21.8% of protein
Raw token
HATPase_c:384:1.15e-19:491:109:109- Raw architecture: HAMP:176:0.00000000000269:247:72:69#HisKA:272:0.00000000000000284:339:68:64#HATPase_c:384:1.15e-19:491:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405615::NZ_CYXV01000008.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148508-150676Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852420_02105RefSeq proteinWP_055262864.1
Context group ID
GCF_001405615::NZ_CYXV01000008.1::G00033Context members
ARB75_RS10350ARB75_RS10355
Partner locus tags
ARB75_RS10350ARB75_RS10355
Partner old locus tags
ERS852420_02105ERS852420_02106
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055262864.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TF39Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TF39_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB75_RS10350Primary locus identifier stored in the genes table.
Old locus tagERS852420_02105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXV01000008.1Sequence record reported by the local genomic context database.
Genomic interval148 508-149 995 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span148 508-150 676 ntGCF_001405615::NZ_CYXV01000008.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405615::NZ_CYXV01000008.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXV01000008.1All displayed genes belong to this local TCS context.
Neighborhood span148 508-150 676 nt2 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 508 nt150 676 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB75_RS10350GCF_001405615#ARB75_RS10350
HKClassicCurrent focus
148 508-149 995 nt · Reverse (-)
ARB75_RS10355GCF_001405615#ARB75_RS10355
RROmpR
149 996-150 676 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS10350The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504804
Simplified PFAM architecture for HKOC_1504804
PFAM domain coverage: 229 / 495 aa (46.3%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-247] | HisKA[272-337] | HATPase_c[384-492]
- Domain count: 3
- Matched identifier: HKOC_1504804
- Positioned domains: HAMP 194-247 ; HisKA 272-337 ; HATPase_c 384-492
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS10350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001405615
Assembly13414_6#47 · Scaffoldreference genome · haploid
Genome composition3 567 818 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 100 · HK 42 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key