1 CHASE#1
2-110 aa · 109 aa · 19.0% of protein
Raw token
CHASE:2:0.00000013:110:125:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS18630
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_001405555
ClassHKTypeHybridLength574 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405555#ARB84_RS18630Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage392 / 574 aa (68.3%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation4 items
2 HisKA#2
219-285 aa · 67 aa · 11.7% of protein
Raw token
HisKA:219:3.74e-16:285:67:643 HATPase_c#3
331-449 aa · 119 aa · 20.7% of protein
Raw token
HATPase_c:331:4.18e-29:449:119:1094 Response_reg#4
477-573 aa · 97 aa · 16.9% of protein
Raw token
Response_reg:477:1.06e-21:573:97:111- Raw architecture: CHASE:2:0.00000013:110:125:183#HisKA:219:3.74e-16:285:67:64#HATPase_c:331:4.18e-29:449:119:109#Response_reg:477:1.06e-21:573:97:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405555::NZ_CYYV01000022.1::G00052
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span22438-24162Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_03257RefSeq proteinWP_242856742.1
Context group ID
GCF_001405555::NZ_CYYV01000022.1::G00052Context members
ARB84_RS18630
Partner locus tags
ARB84_RS18630
Partner old locus tags
ERS852406_03257
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242856742.1Primary protein accession used for annex mappings.
UniProt accessionA0A174JEW3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174JEW3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS18630Primary locus identifier stored in the genes table.
Old locus tagERS852406_03257Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000022.1Sequence record reported by the local genomic context database.
Genomic interval22 438-24 162 nt1 725 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 438-24 162 ntGCF_001405555::NZ_CYYV01000022.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000022.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000022.1All displayed genes belong to this local TCS context.
Neighborhood span22 438-24 162 nt1 725 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 438 nt24 162 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB84_RS18630GCF_001405555#ARB84_RS18630
HKHybridCurrent focus
22 438-24 162 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS18630The current gene is the representative for this cluster.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1193304
Simplified PFAM architecture for HKOC_1193304
PFAM domain coverage: 369 / 574 aa (64.3%)
1 aa574 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[15-104] | HisKA[220-285] | HATPase_c[331-447] | Response_reg[477-572]
- Domain count: 4
- Matched identifier: HKOC_1193304
- Positioned domains: CHASE 15-104 ; HisKA 220-285 ; HATPase_c 331-447 ; Response_reg 477-572
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS18630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key