1 SBP_bac_3#1
21-237 aa · 217 aa · 23.2% of protein
Raw token
SBP_bac_3:21:7.78e-27:237:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS14475
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_001405555
ClassHKTypeHybridLength935 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405555#ARB84_RS14475Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length935 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 935 aa (77.0%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa935 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
259-460 aa · 202 aa · 21.6% of protein
Raw token
SBP_bac_3:259:1.62e-16:460:220:2243 HisKA#3
555-620 aa · 66 aa · 7.1% of protein
Raw token
HisKA:555:9.2e-18:620:66:644 HATPase_c#4
669-786 aa · 118 aa · 12.6% of protein
Raw token
HATPase_c:669:2.08e-26:786:119:1095 Response_reg#5
807-923 aa · 117 aa · 12.5% of protein
Raw token
Response_reg:807:9.29e-31:923:117:111- Raw architecture: SBP_bac_3:21:7.78e-27:237:229:224#SBP_bac_3:259:1.62e-16:460:220:224#HisKA:555:9.2e-18:620:66:64#HATPase_c:669:2.08e-26:786:119:109#Response_reg:807:9.29e-31:923:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405555::NZ_CYYV01000017.1::G00046
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span1-5094Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_02953RefSeq proteinWP_055228492.1
Context group ID
GCF_001405555::NZ_CYYV01000017.1::G00046Context members
ARB84_RS14475ARB84_RS14485
Partner locus tags
ARB84_RS14475ARB84_RS14485
Partner old locus tags
ERS852406_02953ERS852406_02955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055228492.1Primary protein accession used for annex mappings.
UniProt accessionA0A174IBD6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174IBD6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS14475Primary locus identifier stored in the genes table.
Old locus tagERS852406_02953Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000017.1Sequence record reported by the local genomic context database.
Genomic interval1-2 809 nt2 809 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-5 094 ntGCF_001405555::NZ_CYYV01000017.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000017.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000017.1All displayed genes belong to this local TCS context.
Neighborhood span1-5 094 nt5 094 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt5 094 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB84_RS14475GCF_001405555#ARB84_RS14475
HKHybridCurrent focus
1-2 809 nt · Forward (+)
ARB84_RS14485GCF_001405555#ARB84_RS14485
HKHybrid
3 172-5 094 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS14475The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0345979
Simplified PFAM architecture for HKOC_0345979
PFAM domain coverage: 498 / 935 aa (53.3%)
1 aa935 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[29-227] | HisKA[555-620] | HATPase_c[670-785] | Response_reg[807-923]
- Domain count: 4
- Matched identifier: HKOC_0345979
- Positioned domains: SBP_bac_3 29-227 ; HisKA 555-620 ; HATPase_c 670-785 ; Response_reg 807-923
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS14475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key