1 HisKA#1
325-391 aa · 67 aa · 9.9% of protein
Raw token
HisKA:325:7.94e-17:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS12265
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_001405555
ClassHKTypeHybridLength676 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405555#ARB84_RS12265Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length676 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage279 / 676 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa676 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 17.6% of protein
Raw token
HATPase_c:438:2.9e-28:556:119:1093 Response_reg#3
584-676 aa · 93 aa · 13.8% of protein
Raw token
Response_reg:584:1.97e-20:676:93:111- Raw architecture: HisKA:325:7.94e-17:391:67:64#HATPase_c:438:2.9e-28:556:119:109#Response_reg:584:1.97e-20:676:93:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405555::NZ_CYYV01000012.1::G00036
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span35675-37703Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001405555::NZ_CYYV01000012.1::G00036Context members
ARB84_RS12265
Partner locus tags
ARB84_RS12265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055228219.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS12265Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CYYV01000012.1Sequence record reported by the local genomic context database.
Genomic interval35 675-37 703 nt2 029 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 675-37 703 ntGCF_001405555::NZ_CYYV01000012.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000012.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000012.1All displayed genes belong to this local TCS context.
Neighborhood span35 675-37 703 nt2 029 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 675 nt37 703 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB84_RS12265GCF_001405555#ARB84_RS12265
HKHybridCurrent focus
35 675-37 703 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS01160Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730879
Simplified PFAM architecture for HKOC_0730879
PFAM domain coverage: 301 / 721 aa (41.7%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-391] | HATPase_c[438-555] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0730879
- Positioned domains: HisKA 325-391 ; HATPase_c 438-555 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS01160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key