1 HisKA#1
257-323 aa · 67 aa · 10.4% of protein
Raw token
HisKA:257:7.22e-17:323:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS08425
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_001405555
ClassHKTypeHybridLength647 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405555#ARB84_RS08425Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length647 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 647 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa647 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
372-489 aa · 118 aa · 18.2% of protein
Raw token
HATPase_c:372:2.18e-27:489:119:1093 Response_reg#3
516-632 aa · 117 aa · 18.1% of protein
Raw token
Response_reg:516:3.16e-28:632:117:111- Raw architecture: HisKA:257:7.22e-17:323:67:64#HATPase_c:372:2.18e-27:489:119:109#Response_reg:516:3.16e-28:632:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405555::NZ_CYYV01000007.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span220763-223559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_01716RefSeq proteinWP_082424916.1
Context group ID
GCF_001405555::NZ_CYYV01000007.1::G00026Context members
ARB84_RS08425ARB84_RS08435
Partner locus tags
ARB84_RS08425ARB84_RS08435
Partner old locus tags
ERS852406_01716ERS852406_01718
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082424916.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS08425Primary locus identifier stored in the genes table.
Old locus tagERS852406_01716Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000007.1Sequence record reported by the local genomic context database.
Genomic interval220 763-222 706 nt1 944 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 763-223 559 ntGCF_001405555::NZ_CYYV01000007.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000007.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000007.1All displayed genes belong to this local TCS context.
Neighborhood span220 763-223 559 nt2 797 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 763 nt223 559 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB84_RS08425GCF_001405555#ARB84_RS08425
HKHybridCurrent focus
220 763-222 706 nt · Reverse (-)
ARB84_RS08435GCF_001405555#ARB84_RS08435
RRCheY
223 043-223 559 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS08425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0903535
Simplified PFAM architecture for HKOC_0903535
PFAM domain coverage: 299 / 647 aa (46.2%)
1 aa647 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[257-323] | HATPase_c[373-488] | Response_reg[516-631]
- Domain count: 3
- Matched identifier: HKOC_0903535
- Positioned domains: HisKA 257-323 ; HATPase_c 373-488 ; Response_reg 516-631
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS08425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key