1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:1.21e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS07120
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_001405555
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405555#ARB84_RS07120Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.42e-36:227:77:77- Raw architecture: Response_reg:5:1.21e-38:114:111:111#Trans_reg_C:151:1.42e-36:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405555::NZ_CYYV01000006.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span162302-164414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_01451RefSeq proteinWP_055218609.1
Context group ID
GCF_001405555::NZ_CYYV01000006.1::G00019Context members
ARB84_RS07115ARB84_RS07120
Partner locus tags
ARB84_RS07115ARB84_RS07120
Partner old locus tags
ERS852406_01450ERS852406_01451
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055218609.1Primary protein accession used for annex mappings.
UniProt accessionA0A174GVG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174GVG8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS07120Primary locus identifier stored in the genes table.
Old locus tagERS852406_01451Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000006.1Sequence record reported by the local genomic context database.
Genomic interval163 725-164 414 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span162 302-164 414 ntGCF_001405555::NZ_CYYV01000006.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000006.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000006.1All displayed genes belong to this local TCS context.
Neighborhood span162 302-164 414 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
162 302 nt164 414 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB84_RS07115GCF_001405555#ARB84_RS07115
HKClassic
162 302-163 768 nt · Reverse (-)
ARB84_RS07120GCF_001405555#ARB84_RS07120
RROmpRCurrent focus
163 725-164 414 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS07120The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253468
Simplified PFAM architecture for RROC_1253468
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1253468
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS07120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key