1 HAMP#1
190-258 aa · 69 aa · 14.1% of protein
Raw token
HAMP:190:0.000000000246:258:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS07115
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_001405555
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405555#ARB84_RS07115Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 488 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.5% of protein
Raw token
HisKA:262:0.00000000000733:327:66:643 HATPase_c#3
375-484 aa · 110 aa · 22.5% of protein
Raw token
HATPase_c:375:6.65e-29:484:110:109- Raw architecture: HAMP:190:0.000000000246:258:69:69#HisKA:262:0.00000000000733:327:66:64#HATPase_c:375:6.65e-29:484:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405555::NZ_CYYV01000006.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span162302-164414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_01450RefSeq proteinWP_055227348.1
Context group ID
GCF_001405555::NZ_CYYV01000006.1::G00019Context members
ARB84_RS07115ARB84_RS07120
Partner locus tags
ARB84_RS07115ARB84_RS07120
Partner old locus tags
ERS852406_01450ERS852406_01451
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055227348.1Primary protein accession used for annex mappings.
UniProt accessionA0A174D0A9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174D0A9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS07115Primary locus identifier stored in the genes table.
Old locus tagERS852406_01450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000006.1Sequence record reported by the local genomic context database.
Genomic interval162 302-163 768 nt1 467 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span162 302-164 414 ntGCF_001405555::NZ_CYYV01000006.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000006.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000006.1All displayed genes belong to this local TCS context.
Neighborhood span162 302-164 414 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
162 302 nt164 414 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB84_RS07115GCF_001405555#ARB84_RS07115
HKClassicCurrent focus
162 302-163 768 nt · Reverse (-)
ARB84_RS07120GCF_001405555#ARB84_RS07120
RROmpR
163 725-164 414 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS07115The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1550691
Simplified PFAM architecture for HKOC_1550691
PFAM domain coverage: 176 / 488 aa (36.1%)
1 aa488 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[262-327] | HATPase_c[375-484]
- Domain count: 2
- Matched identifier: HKOC_1550691
- Positioned domains: HisKA 262-327 ; HATPase_c 375-484
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS07115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key