1 HisKA#1
193-254 aa · 62 aa · 15.2% of protein
Raw token
HisKA:193:0.00000000185:254:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS06610
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_001405555
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405555#ARB84_RS06610Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 409 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-405 aa · 100 aa · 24.4% of protein
Raw token
HATPase_c:306:5.57e-24:405:100:109- Raw architecture: HisKA:193:0.00000000185:254:62:64#HATPase_c:306:5.57e-24:405:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405555::NZ_CYYV01000006.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49329-51253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_01350RefSeq proteinWP_055227217.1
Context group ID
GCF_001405555::NZ_CYYV01000006.1::G00017Context members
ARB84_RS06605ARB84_RS06610
Partner locus tags
ARB84_RS06605ARB84_RS06610
Partner old locus tags
ERS852406_01349ERS852406_01350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055227217.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XSE0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XSE0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS06610Primary locus identifier stored in the genes table.
Old locus tagERS852406_01350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000006.1Sequence record reported by the local genomic context database.
Genomic interval50 024-51 253 nt1 230 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 329-51 253 ntGCF_001405555::NZ_CYYV01000006.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000006.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000006.1All displayed genes belong to this local TCS context.
Neighborhood span49 329-51 253 nt1 925 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 329 nt51 253 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB84_RS06605GCF_001405555#ARB84_RS06605
RROmpR
49 329-50 021 nt · Forward (+)
ARB84_RS06610GCF_001405555#ARB84_RS06610
HKClassicCurrent focus
50 024-51 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS06610The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2363327
Simplified PFAM architecture for HKOC_2363327
PFAM domain coverage: 164 / 409 aa (40.1%)
1 aa409 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-254] | HATPase_c[304-405]
- Domain count: 2
- Matched identifier: HKOC_2363327
- Positioned domains: HisKA 193-254 ; HATPase_c 304-405
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS06610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key