1 HisKA#1
649-714 aa · 66 aa · 7.3% of protein
Raw token
HisKA:649:1.79e-16:714:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS04340
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_001405555
ClassHKTypeClassicLength898 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405555#ARB84_RS04340Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 898 aa (19.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
760-867 aa · 108 aa · 12.0% of protein
Raw token
HATPase_c:760:0.0000000000611:867:113:109- Raw architecture: HisKA:649:1.79e-16:714:66:64#HATPase_c:760:0.0000000000611:867:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405555::NZ_CYYV01000004.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81532-84940Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_00884RefSeq proteinWP_055226642.1
Context group ID
GCF_001405555::NZ_CYYV01000004.1::G00015Context members
ARB84_RS04335ARB84_RS04340
Partner locus tags
ARB84_RS04335ARB84_RS04340
Partner old locus tags
ERS852406_00883ERS852406_00884
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055226642.1Primary protein accession used for annex mappings.
UniProt accessionA0A174IU92Primary UniProt accession resolved in the annex database.
UniProt IDA0A174IU92_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS04340Primary locus identifier stored in the genes table.
Old locus tagERS852406_00884Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000004.1Sequence record reported by the local genomic context database.
Genomic interval82 244-84 940 nt2 697 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 532-84 940 ntGCF_001405555::NZ_CYYV01000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000004.1All displayed genes belong to this local TCS context.
Neighborhood span81 532-84 940 nt3 409 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 532 nt84 940 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB84_RS04335GCF_001405555#ARB84_RS04335
RROmpR
81 532-82 227 nt · Forward (+)
ARB84_RS04340GCF_001405555#ARB84_RS04340
HKClassicCurrent focus
82 244-84 940 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS04340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0409030
Simplified PFAM architecture for HKOC_0409030
PFAM domain coverage: 158 / 898 aa (17.6%)
1 aa898 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[649-714] | HATPase_c[761-852]
- Domain count: 2
- Matched identifier: HKOC_0409030
- Positioned domains: HisKA 649-714 ; HATPase_c 761-852
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS04340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key