1 Response_reg#1
4-111 aa · 108 aa · 20.5% of protein
Raw token
Response_reg:4:6.86e-24:111:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS04000
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_001405555
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405555#ARB84_RS04000Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 527 aa (27.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.0000000013:525:37:42- Raw architecture: Response_reg:4:6.86e-24:111:108:111#HTH_AraC:489:0.0000000013:525:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405555::NZ_CYYV01000004.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6714-8297Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_00817RefSeq proteinWP_055226563.1
Context group ID
GCF_001405555::NZ_CYYV01000004.1::G00012Context members
ARB84_RS04000
Partner locus tags
ARB84_RS04000
Partner old locus tags
ERS852406_00817
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055226563.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AIM6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AIM6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS04000Primary locus identifier stored in the genes table.
Old locus tagERS852406_00817Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000004.1Sequence record reported by the local genomic context database.
Genomic interval6 714-8 297 nt1 584 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 714-8 297 ntGCF_001405555::NZ_CYYV01000004.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000004.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000004.1All displayed genes belong to this local TCS context.
Neighborhood span6 714-8 297 nt1 584 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 714 nt8 297 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB84_RS04000GCF_001405555#ARB84_RS04000
RRunclassifiedCurrent focus
6 714-8 297 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS04000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116021
Simplified PFAM architecture for RROC_0116021
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[447-526]
- Domain count: 2
- Matched identifier: RROC_0116021
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 447-526 ; HTH_18 447-526
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS04000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key