1 Response_reg#1
5-115 aa · 111 aa · 38.4% of protein
Raw token
Response_reg:5:8.98e-31:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB84_RS00405
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_001405555
ClassRRTypeunclassifiedLength289 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405555#ARB84_RS00405Stable P2CS identifier used across views.
GenomeGCF_001405555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length289 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 289 aa (38.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa289 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8.98e-31:115:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405555::NZ_CYYV01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span78385-79254Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852406_00079RefSeq proteinWP_055225741.1
Context group ID
GCF_001405555::NZ_CYYV01000001.1::G00002Context members
ARB84_RS00405
Partner locus tags
ARB84_RS00405
Partner old locus tags
ERS852406_00079
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055225741.1Primary protein accession used for annex mappings.
UniProt accessionA0A173WE95Primary UniProt accession resolved in the annex database.
UniProt IDA0A173WE95_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB84_RS00405Primary locus identifier stored in the genes table.
Old locus tagERS852406_00079Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYV01000001.1Sequence record reported by the local genomic context database.
Genomic interval78 385-79 254 nt870 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 385-79 254 ntGCF_001405555::NZ_CYYV01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405555::NZ_CYYV01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span78 385-79 254 nt870 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 385 nt79 254 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB84_RS00405GCF_001405555#ARB84_RS00405
RRunclassifiedCurrent focus
78 385-79 254 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS00405The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0587632
Simplified PFAM architecture for RROC_0587632
PFAM domain coverage: 110 / 289 aa (38.1%)
1 aa289 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-114]
- Domain count: 1
- Matched identifier: RROC_0587632
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS00405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001405555
Assembly13414_6#33 · Scaffoldhaploid
Genome composition3 653 886 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 93 · HK 44 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key