1 Response_reg#1
4-117 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:4:1.31e-24:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA49_RS00965
Response regulator, unclassified
Blautia obeum · GCF_001405455
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405455#ARA49_RS00965Stable P2CS identifier used across views.
GenomeGCF_001405455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 534 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-478 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:436:0.0000000318:478:43:423 HTH_AraC#3
490-527 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:490:0.000000000802:527:38:42- Raw architecture: Response_reg:4:1.31e-24:117:114:111#HTH_AraC:436:0.0000000318:478:43:42#HTH_AraC:490:0.000000000802:527:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405455::NZ_CYZP01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219949-223372Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852476_00199RefSeq proteinWP_055057252.1
Context group ID
GCF_001405455::NZ_CYZP01000001.1::G00005Context members
ARA49_RS00960ARA49_RS00965
Partner locus tags
ARA49_RS00960ARA49_RS00965
Partner old locus tags
ERS852476_00198ERS852476_00199
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055057252.1Primary protein accession used for annex mappings.
UniProt accessionA0A173X612Primary UniProt accession resolved in the annex database.
UniProt IDA0A173X612_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA49_RS00965Primary locus identifier stored in the genes table.
Old locus tagERS852476_00199Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZP01000001.1Sequence record reported by the local genomic context database.
Genomic interval221 768-223 372 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span219 949-223 372 ntGCF_001405455::NZ_CYZP01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405455::NZ_CYZP01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span219 949-223 372 nt3 424 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 949 nt223 372 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA49_RS00960GCF_001405455#ARA49_RS00960
HKClassic
219 949-221 793 nt · Forward (+)
ARA49_RS00965GCF_001405455#ARA49_RS00965
RRunclassifiedCurrent focus
221 768-223 372 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405455#ARA49_RS00965The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103201
Simplified PFAM architecture for RROC_0103201
PFAM domain coverage: 193 / 534 aa (36.1%)
1 aa534 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[436-478] | HTH_AraC[491-527]
- Domain count: 3
- Matched identifier: RROC_0103201
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_AraC 436-478 ; HTH_AraC 436-478 ; HTH_AraC 491-527 ; HTH_AraC 491-527
Cluster members and taxonomy
Representative gene: GCF_001405455#ARA49_RS00965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405455
Assembly13470_2#80 · Scaffoldhaploid
Genome composition4 147 026 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 121 · HK 60 · RR 58CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key