1 HAMP#1
307-385 aa · 79 aa · 12.9% of protein
Raw token
HAMP:307:0.000000165:385:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA49_RS00960
Histidine kinase, Classic
Blautia obeum · GCF_001405455
ClassHKTypeClassicLength614 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405455#ARA49_RS00960Stable P2CS identifier used across views.
GenomeGCF_001405455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length614 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 614 aa (42.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa614 aa
Domain-by-domain annotation3 items
2 His_kinase#2
400-479 aa · 80 aa · 13.0% of protein
Raw token
His_kinase:400:1.28e-23:479:80:803 HATPase_c#3
499-600 aa · 102 aa · 16.6% of protein
Raw token
HATPase_c:499:0.00000000000311:600:104:109- Raw architecture: HAMP:307:0.000000165:385:79:69#His_kinase:400:1.28e-23:479:80:80#HATPase_c:499:0.00000000000311:600:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405455::NZ_CYZP01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219949-223372Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852476_00198RefSeq proteinWP_055057251.1
Context group ID
GCF_001405455::NZ_CYZP01000001.1::G00005Context members
ARA49_RS00960ARA49_RS00965
Partner locus tags
ARA49_RS00960ARA49_RS00965
Partner old locus tags
ERS852476_00198ERS852476_00199
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055057251.1Primary protein accession used for annex mappings.
UniProt accessionA0A173X4J0Primary UniProt accession resolved in the annex database.
UniProt IDA0A173X4J0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA49_RS00960Primary locus identifier stored in the genes table.
Old locus tagERS852476_00198Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZP01000001.1Sequence record reported by the local genomic context database.
Genomic interval219 949-221 793 nt1 845 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span219 949-223 372 ntGCF_001405455::NZ_CYZP01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405455::NZ_CYZP01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span219 949-223 372 nt3 424 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 949 nt223 372 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA49_RS00960GCF_001405455#ARA49_RS00960
HKClassicCurrent focus
219 949-221 793 nt · Forward (+)
ARA49_RS00965GCF_001405455#ARA49_RS00965
RRunclassified
221 768-223 372 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405455#ARA49_RS00960The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0991418
Simplified PFAM architecture for HKOC_0991418
PFAM domain coverage: 181 / 614 aa (29.5%)
1 aa614 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[401-478] | HATPase_c[499-601]
- Domain count: 2
- Matched identifier: HKOC_0991418
- Positioned domains: His_kinase 401-478 ; HATPase_c 499-601
Cluster members and taxonomy
Representative gene: GCF_001405455#ARA49_RS00960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405455
Assembly13470_2#80 · Scaffoldhaploid
Genome composition4 147 026 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 121 · HK 60 · RR 58CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key