1 Response_reg#1
7-116 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:7:6.35e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA49_RS00670
Response regulator OmpR family
Blautia obeum · GCF_001405455
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405455#ARA49_RS00670Stable P2CS identifier used across views.
GenomeGCF_001405455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-228 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:154:2.17e-35:228:77:77- Raw architecture: Response_reg:7:6.35e-36:116:111:111#Trans_reg_C:154:2.17e-35:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405455::NZ_CYZP01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145670-147780Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852476_00139RefSeq proteinWP_055057231.1
Context group ID
GCF_001405455::NZ_CYZP01000001.1::G00003Context members
ARA49_RS00670ARA49_RS00675
Partner locus tags
ARA49_RS00670ARA49_RS00675
Partner old locus tags
ERS852476_00139ERS852476_00140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055057231.1Primary protein accession used for annex mappings.
UniProt accessionA0A173X0D7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173X0D7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA49_RS00670Primary locus identifier stored in the genes table.
Old locus tagERS852476_00139Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZP01000001.1Sequence record reported by the local genomic context database.
Genomic interval145 670-146 371 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span145 670-147 780 ntGCF_001405455::NZ_CYZP01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405455::NZ_CYZP01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span145 670-147 780 nt2 111 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 670 nt147 780 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA49_RS00670GCF_001405455#ARA49_RS00670
RROmpRCurrent focus
145 670-146 371 nt · Forward (+)
ARA49_RS00675GCF_001405455#ARA49_RS00675
HKClassic
146 368-147 780 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405455#ARA49_RS00670The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1085142
Simplified PFAM architecture for RROC_1085142
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1085142
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_001405455#ARA49_RS00670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001405455
Assembly13470_2#80 · Scaffoldhaploid
Genome composition4 147 026 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 121 · HK 60 · RR 58CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key