1 Response_reg#1
3-112 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:3:3.83e-35:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ993_RS09580
Response regulator OmpR family
Agathobacter rectalis · GCF_001405295
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405295#AQ993_RS09580Stable P2CS identifier used across views.
GenomeGCF_001405295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:1.4e-30:226:77:77- Raw architecture: Response_reg:3:3.83e-35:112:111:111#Trans_reg_C:150:1.4e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405295::NZ_CZAJ01000018.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47154-49216Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852497_01977RefSeq proteinWP_055274158.1
Context group ID
GCF_001405295::NZ_CZAJ01000018.1::G00021Context members
AQ993_RS09575AQ993_RS09580
Partner locus tags
AQ993_RS09575AQ993_RS09580
Partner old locus tags
ERS852497_01976ERS852497_01977
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055274158.1Primary protein accession used for annex mappings.
UniProt accessionA0A174KLX3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174KLX3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ993_RS09580Primary locus identifier stored in the genes table.
Old locus tagERS852497_01977Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAJ01000018.1Sequence record reported by the local genomic context database.
Genomic interval48 524-49 216 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 154-49 216 ntGCF_001405295::NZ_CZAJ01000018.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405295::NZ_CZAJ01000018.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAJ01000018.1All displayed genes belong to this local TCS context.
Neighborhood span47 154-49 216 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 154 nt49 216 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ993_RS09575GCF_001405295#AQ993_RS09575
HKClassic
47 154-48 527 nt · Reverse (-)
AQ993_RS09580GCF_001405295#AQ993_RS09580
RROmpRCurrent focus
48 524-49 216 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405295#AQ993_RS09580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1205228
Simplified PFAM architecture for RROC_1205228
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1205228
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_001405295#AQ993_RS09580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001405295
Assembly14207_7#7 · Scaffoldhaploid
Genome composition3 056 970 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 60 · HK 27 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key