1 HAMP#1
181-250 aa · 70 aa · 14.0% of protein
Raw token
HAMP:181:0.00000000000000103:250:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS11030
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS11030Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 501 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
275-342 aa · 68 aa · 13.6% of protein
Raw token
HisKA:275:4.64e-16:342:68:643 HATPase_c#3
387-497 aa · 111 aa · 22.2% of protein
Raw token
HATPase_c:387:1.9e-19:497:113:109- Raw architecture: HAMP:181:0.00000000000000103:250:70:69#HisKA:275:4.64e-16:342:68:64#HATPase_c:387:1.9e-19:497:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000012.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56654-58854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_02240RefSeq proteinWP_020436211.1
Context group ID
GCF_001405235::NZ_CZBS01000012.1::G00029Context members
ARA40_RS11030ARA40_RS11035
Partner locus tags
ARA40_RS11030ARA40_RS11035
Partner old locus tags
ERS852424_02240ERS852424_02241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020436211.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KGG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KGG8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS11030Primary locus identifier stored in the genes table.
Old locus tagERS852424_02240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000012.1Sequence record reported by the local genomic context database.
Genomic interval56 654-58 159 nt1 506 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 654-58 854 ntGCF_001405235::NZ_CZBS01000012.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000012.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span56 654-58 854 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 654 nt58 854 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS11030GCF_001405235#ARA40_RS11030
HKClassicCurrent focus
56 654-58 159 nt · Reverse (-)
ARA40_RS11035GCF_001405235#ARA40_RS11035
RROmpR
58 165-58 854 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS11030The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468946
Simplified PFAM architecture for HKOC_1468946
PFAM domain coverage: 226 / 501 aa (45.1%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-249] | HisKA[275-340] | HATPase_c[388-496]
- Domain count: 3
- Matched identifier: HKOC_1468946
- Positioned domains: HAMP 199-249 ; HisKA 275-340 ; HATPase_c 388-496
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS11030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key