1 dCache_1#1
46-260 aa · 215 aa · 37.8% of protein
Raw token
dCache_1:46:0.0000787:260:236:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS10970
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS10970Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage471 / 569 aa (82.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation4 items
2 HAMP#2
285-351 aa · 67 aa · 11.8% of protein
Raw token
HAMP:285:0.00000000758:351:67:693 His_kinase#3
366-445 aa · 80 aa · 14.1% of protein
Raw token
His_kinase:366:5.04e-28:445:80:804 HATPase_c#4
456-564 aa · 109 aa · 19.2% of protein
Raw token
HATPase_c:456:3.56e-16:564:118:109- Raw architecture: dCache_1:46:0.0000787:260:236:195#HAMP:285:0.00000000758:351:67:69#His_kinase:366:5.04e-28:445:80:80#HATPase_c:456:3.56e-16:564:118:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000012.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44599-47827Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_02228RefSeq proteinWP_081016903.1
Context group ID
GCF_001405235::NZ_CZBS01000012.1::G00028Context members
ARA40_RS10970ARA40_RS10975
Partner locus tags
ARA40_RS10970ARA40_RS10975
Partner old locus tags
ERS852424_02228ERS852424_02229
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081016903.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS10970Primary locus identifier stored in the genes table.
Old locus tagERS852424_02228Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000012.1Sequence record reported by the local genomic context database.
Genomic interval44 599-46 308 nt1 710 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 599-47 827 ntGCF_001405235::NZ_CZBS01000012.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000012.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span44 599-47 827 nt3 229 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 599 nt47 827 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS10970GCF_001405235#ARA40_RS10970
HKClassicCurrent focus
44 599-46 308 nt · Reverse (-)
ARA40_RS10975GCF_001405235#ARA40_RS10975
RRunclassified
46 271-47 827 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS10970The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1217042
Simplified PFAM architecture for HKOC_1217042
PFAM domain coverage: 179 / 569 aa (31.5%)
1 aa569 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-443] | HATPase_c[462-563]
- Domain count: 2
- Matched identifier: HKOC_1217042
- Positioned domains: His_kinase 367-443 ; HATPase_c 462-563
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS10970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key