1 sCache_like#1
29-135 aa · 107 aa · 24.5% of protein
Raw token
sCache_like:29:0.0000000109:135:119:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS10845
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength436 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS10845Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length436 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage283 / 436 aa (64.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa436 aa
Domain-by-domain annotation3 items
2 HisKA#2
218-284 aa · 67 aa · 15.4% of protein
Raw token
HisKA:218:2.83e-17:284:67:643 HATPase_c#3
328-436 aa · 109 aa · 25.0% of protein
Raw token
HATPase_c:328:8.39e-26:436:109:109- Raw architecture: sCache_like:29:0.0000000109:135:119:114#HisKA:218:2.83e-17:284:67:64#HATPase_c:328:8.39e-26:436:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000012.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14001-16008Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001405235::NZ_CZBS01000012.1::G00027Context members
ARA40_RS10845ARA40_RS10850
Partner locus tags
ARA40_RS10845ARA40_RS10850
Partner old locus tags
ERS852424_02203
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055148425.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS10845Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CZBS01000012.1Sequence record reported by the local genomic context database.
Genomic interval14 001-15 309 nt1 309 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 001-16 008 ntGCF_001405235::NZ_CZBS01000012.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000012.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span14 001-16 008 nt2 008 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 001 nt16 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS10845GCF_001405235#ARA40_RS10845
HKClassicCurrent focus
14 001-15 309 nt · Reverse (-)
ARA40_RS10850GCF_001405235#ARA40_RS10850
RROmpR
15 334-16 008 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406755#ARA59_RS10810Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2083329
Simplified PFAM architecture for HKOC_2083329
PFAM domain coverage: 174 / 439 aa (39.6%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[218-283] | HATPase_c[331-438]
- Domain count: 2
- Matched identifier: HKOC_2083329
- Positioned domains: HisKA 218-283 ; HATPase_c 331-438
Cluster members and taxonomy
Representative gene: GCF_001406755#ARA59_RS10810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key