1 HAMP#1
158-225 aa · 68 aa · 14.9% of protein
Raw token
HAMP:158:0.000000163:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS09790
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS09790Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 457 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-295 aa · 66 aa · 14.4% of protein
Raw token
HisKA:230:0.000000000000373:295:66:643 HATPase_c#3
343-452 aa · 110 aa · 24.1% of protein
Raw token
HATPase_c:343:2.55e-31:452:110:109- Raw architecture: HAMP:158:0.000000163:225:69:69#HisKA:230:0.000000000000373:295:66:64#HATPase_c:343:2.55e-31:452:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000009.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110186-112307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01992RefSeq proteinWP_055148198.1
Context group ID
GCF_001405235::NZ_CZBS01000009.1::G00026Context members
ARA40_RS09790ARA40_RS09795
Partner locus tags
ARA40_RS09790ARA40_RS09795
Partner old locus tags
ERS852424_01992ERS852424_01993
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055148198.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS09790Primary locus identifier stored in the genes table.
Old locus tagERS852424_01992Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000009.1Sequence record reported by the local genomic context database.
Genomic interval110 186-111 559 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 186-112 307 ntGCF_001405235::NZ_CZBS01000009.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000009.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000009.1All displayed genes belong to this local TCS context.
Neighborhood span110 186-112 307 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 186 nt112 307 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS09790GCF_001405235#ARA40_RS09790
HKClassicCurrent focus
110 186-111 559 nt · Reverse (-)
ARA40_RS09795GCF_001405235#ARA40_RS09795
RROmpR
111 618-112 307 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS09790The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1875206
Simplified PFAM architecture for HKOC_1875206
PFAM domain coverage: 175 / 457 aa (38.3%)
1 aa457 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[231-295] | HATPase_c[343-452]
- Domain count: 2
- Matched identifier: HKOC_1875206
- Positioned domains: HisKA 231-295 ; HATPase_c 343-452
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS09790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key