1 HisKA#1
87-146 aa · 60 aa · 20.1% of protein
Raw token
HisKA:87:0.00000000000355:146:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS08780
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405235#ARA40_RS08780Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 299 aa (56.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-299 aa · 108 aa · 36.1% of protein
Raw token
HATPase_c:192:4.16e-20:299:110:109- Raw architecture: HisKA:87:0.00000000000355:146:60:64#HATPase_c:192:4.16e-20:299:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405235::NZ_CZBS01000008.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span15747-16646Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01786RefSeq proteinWP_020436328.1
Context group ID
GCF_001405235::NZ_CZBS01000008.1::G00024Context members
ARA40_RS08780
Partner locus tags
ARA40_RS08780
Partner old locus tags
ERS852424_01786
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_020436328.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS08780Primary locus identifier stored in the genes table.
Old locus tagERS852424_01786Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000008.1Sequence record reported by the local genomic context database.
Genomic interval15 747-16 646 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 747-16 646 ntGCF_001405235::NZ_CZBS01000008.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000008.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000008.1All displayed genes belong to this local TCS context.
Neighborhood span15 747-16 646 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 747 nt16 646 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA40_RS08780GCF_001405235#ARA40_RS08780
HKClassicCurrent focus
15 747-16 646 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS08780The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2887677
Simplified PFAM architecture for HKOC_2887677
PFAM domain coverage: 164 / 299 aa (54.8%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-145] | HATPase_c[193-297]
- Domain count: 2
- Matched identifier: HKOC_2887677
- Positioned domains: HisKA 87-145 ; HATPase_c 193-297
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS08780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key