1 HisKA#1
485-547 aa · 63 aa · 8.8% of protein
Raw token
HisKA:485:7.94e-17:547:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS08235
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength712 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS08235Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length712 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 712 aa (22.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa712 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
597-691 aa · 95 aa · 13.3% of protein
Raw token
HATPase_c:597:0.000000000281:691:99:109- Raw architecture: HisKA:485:7.94e-17:547:63:64#HATPase_c:597:0.000000000281:691:99:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000007.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21936-24744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01679RefSeq proteinWP_055147655.1
Context group ID
GCF_001405235::NZ_CZBS01000007.1::G00022Context members
ARA40_RS08230ARA40_RS08235
Partner locus tags
ARA40_RS08230ARA40_RS08235
Partner old locus tags
ERS852424_01678ERS852424_01679
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055147655.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS08235Primary locus identifier stored in the genes table.
Old locus tagERS852424_01679Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000007.1Sequence record reported by the local genomic context database.
Genomic interval22 606-24 744 nt2 139 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 936-24 744 ntGCF_001405235::NZ_CZBS01000007.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000007.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000007.1All displayed genes belong to this local TCS context.
Neighborhood span21 936-24 744 nt2 809 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 936 nt24 744 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS08230GCF_001405235#ARA40_RS08230
RROmpR
21 936-22 634 nt · Forward (+)
ARA40_RS08235GCF_001405235#ARA40_RS08235
HKClassicCurrent focus
22 606-24 744 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS08235The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0747535
Simplified PFAM architecture for HKOC_0747535
PFAM domain coverage: 158 / 712 aa (22.2%)
1 aa712 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[485-547] | HATPase_c[597-691]
- Domain count: 2
- Matched identifier: HKOC_0747535
- Positioned domains: HisKA 485-547 ; HATPase_c 597-691
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS08235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key