1 HAMP#1
85-155 aa · 71 aa · 17.2% of protein
Raw token
HAMP:85:0.000000000223:155:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS07275
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS07275Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 413 aa (59.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 16.2% of protein
Raw token
HisKA:160:0.0000000000462:226:67:643 HATPase_c#3
296-404 aa · 109 aa · 26.4% of protein
Raw token
HATPase_c:296:3.59e-31:404:109:109- Raw architecture: HAMP:85:0.000000000223:155:71:69#HisKA:160:0.0000000000462:226:67:64#HATPase_c:296:3.59e-31:404:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000005.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span205713-207688Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01479RefSeq proteinWP_020435935.1
Context group ID
GCF_001405235::NZ_CZBS01000005.1::G00020Context members
ARA40_RS07275ARA40_RS07280
Partner locus tags
ARA40_RS07275ARA40_RS07280
Partner old locus tags
ERS852424_01479ERS852424_01480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020435935.1Primary protein accession used for annex mappings.
UniProt accessionA0A174XAA2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174XAA2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS07275Primary locus identifier stored in the genes table.
Old locus tagERS852424_01479Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000005.1Sequence record reported by the local genomic context database.
Genomic interval205 713-206 954 nt1 242 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span205 713-207 688 ntGCF_001405235::NZ_CZBS01000005.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000005.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span205 713-207 688 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
205 713 nt207 688 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS07275GCF_001405235#ARA40_RS07275
HKClassicCurrent focus
205 713-206 954 nt · Reverse (-)
ARA40_RS07280GCF_001405235#ARA40_RS07280
RROmpR
206 951-207 688 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS07275The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328818
Simplified PFAM architecture for HKOC_2328818
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-225] | HATPase_c[299-404]
- Domain count: 2
- Matched identifier: HKOC_2328818
- Positioned domains: HisKA 160-225 ; HATPase_c 299-404
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS07275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key