1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:4.04e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS06585
Response regulator OmpR family
[Ruminococcus] torques · GCF_001405235
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS06585Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:152:4.71e-31:228:77:77- Raw architecture: Response_reg:5:4.04e-37:114:111:111#Trans_reg_C:152:4.71e-31:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000005.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55820-57563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01336RefSeq proteinWP_015529995.1
Context group ID
GCF_001405235::NZ_CZBS01000005.1::G00018Context members
ARA40_RS06585ARA40_RS06590
Partner locus tags
ARA40_RS06585ARA40_RS06590
Partner old locus tags
ERS852424_01336ERS852424_01337
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015529995.1Primary protein accession used for annex mappings.
UniProt accessionD4M077Primary UniProt accession resolved in the annex database.
UniProt IDD4M077_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS06585Primary locus identifier stored in the genes table.
Old locus tagERS852424_01336Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000005.1Sequence record reported by the local genomic context database.
Genomic interval55 820-56 512 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 820-57 563 ntGCF_001405235::NZ_CZBS01000005.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000005.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span55 820-57 563 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 820 nt57 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS06585GCF_001405235#ARA40_RS06585
RROmpRCurrent focus
55 820-56 512 nt · Reverse (-)
ARA40_RS06590GCF_001405235#ARA40_RS06590
HKClassic
56 505-57 563 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS14465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200590
Simplified PFAM architecture for RROC_1200590
PFAM domain coverage: 187 / 230 aa (81.3%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1200590
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS14465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key