1 HisKA#1
83-145 aa · 63 aa · 20.9% of protein
Raw token
HisKA:83:0.000000000438:145:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS06330
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength301 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS06330Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 301 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-296 aa · 100 aa · 33.2% of protein
Raw token
HATPase_c:197:2.71e-24:296:100:109- Raw architecture: HisKA:83:0.000000000438:145:63:64#HATPase_c:197:2.71e-24:296:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000005.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7996-9580Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01287RefSeq proteinWP_055066700.1
Context group ID
GCF_001405235::NZ_CZBS01000005.1::G00017Context members
ARA40_RS06325ARA40_RS06330
Partner locus tags
ARA40_RS06325ARA40_RS06330
Partner old locus tags
ERS852424_01286ERS852424_01287
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066700.1Primary protein accession used for annex mappings.
UniProt accessionA0A174I9I0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174I9I0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS06330Primary locus identifier stored in the genes table.
Old locus tagERS852424_01287Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000005.1Sequence record reported by the local genomic context database.
Genomic interval8 675-9 580 nt906 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 996-9 580 ntGCF_001405235::NZ_CZBS01000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span7 996-9 580 nt1 585 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 996 nt9 580 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS06325GCF_001405235#ARA40_RS06325
RROmpR
7 996-8 670 nt · Forward (+)
ARA40_RS06330GCF_001405235#ARA40_RS06330
HKClassicCurrent focus
8 675-9 580 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016586395#JMF83_RS05160Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2865574
Simplified PFAM architecture for HKOC_2865574
PFAM domain coverage: 166 / 324 aa (51.2%)
1 aa324 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[105-167] | HATPase_c[218-320]
- Domain count: 2
- Matched identifier: HKOC_2865574
- Positioned domains: HisKA 105-167 ; HATPase_c 218-320
Cluster members and taxonomy
Representative gene: GCF_016586395#JMF83_RS05160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key