1 Response_reg#1
4-112 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:4:8.94e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS06280
Response regulator OmpR family
[Ruminococcus] torques · GCF_001405235
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS06280Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:3.33e-26:218:77:77- Raw architecture: Response_reg:4:8.94e-33:112:111:111#Trans_reg_C:144:3.33e-26:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000005.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span426-2452Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01277RefSeq proteinWP_055146899.1
Context group ID
GCF_001405235::NZ_CZBS01000005.1::G00016Context members
ARA40_RS06275ARA40_RS06280
Partner locus tags
ARA40_RS06275ARA40_RS06280
Partner old locus tags
ERS852424_01276ERS852424_01277
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055146899.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS06280Primary locus identifier stored in the genes table.
Old locus tagERS852424_01277Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000005.1Sequence record reported by the local genomic context database.
Genomic interval1 790-2 452 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span426-2 452 ntGCF_001405235::NZ_CZBS01000005.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000005.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span426-2 452 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
426 nt2 452 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS06275GCF_001405235#ARA40_RS06275
HKClassic
426-1 802 nt · Reverse (-)
ARA40_RS06280GCF_001405235#ARA40_RS06280
RROmpRCurrent focus
1 790-2 452 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS06280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1727202
Simplified PFAM architecture for RROC_1727202
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1727202
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS06280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key