1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.000058:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS06275
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS06275Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000123:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:6.81e-18:451:106:109- Raw architecture: HAMP:152:0.000058:222:71:69#HisKA:233:0.0000000000123:294:62:64#HATPase_c:346:6.81e-18:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000005.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span426-2452Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01276RefSeq proteinWP_015530078.1
Context group ID
GCF_001405235::NZ_CZBS01000005.1::G00016Context members
ARA40_RS06275ARA40_RS06280
Partner locus tags
ARA40_RS06275ARA40_RS06280
Partner old locus tags
ERS852424_01276ERS852424_01277
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015530078.1Primary protein accession used for annex mappings.
UniProt accessionD4M0I3Primary UniProt accession resolved in the annex database.
UniProt IDD4M0I3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS06275Primary locus identifier stored in the genes table.
Old locus tagERS852424_01276Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000005.1Sequence record reported by the local genomic context database.
Genomic interval426-1 802 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span426-2 452 ntGCF_001405235::NZ_CZBS01000005.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000005.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span426-2 452 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
426 nt2 452 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS06275GCF_001405235#ARA40_RS06275
HKClassicCurrent focus
426-1 802 nt · Reverse (-)
ARA40_RS06280GCF_001405235#ARA40_RS06280
RROmpR
1 790-2 452 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS15040Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858566
Simplified PFAM architecture for HKOC_1858566
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1858566
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS15040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key