1 GGDEF#1
197-351 aa · 155 aa · 14.6% of protein
Raw token
GGDEF:197:6.84e-25:351:161:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS06250
Histidine kinase, Hybrid
[Ruminococcus] torques · GCF_001405235
ClassHKTypeHybridLength1059 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405235#ARA40_RS06250Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1059 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage460 / 1059 aa (43.4%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1059 aa
Domain-by-domain annotation4 items
2 HisKA#2
672-738 aa · 67 aa · 6.3% of protein
Raw token
HisKA:672:2.69e-16:738:67:643 HATPase_c#3
785-902 aa · 118 aa · 11.1% of protein
Raw token
HATPase_c:785:7.05e-28:902:118:1094 Response_reg#4
934-1053 aa · 120 aa · 11.3% of protein
Raw token
Response_reg:934:3.66e-24:1053:120:111- Raw architecture: GGDEF:197:6.84e-25:351:161:160#HisKA:672:2.69e-16:738:67:64#HATPase_c:785:7.05e-28:902:118:109#Response_reg:934:3.66e-24:1053:120:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405235::NZ_CZBS01000004.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span243502-246681Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01270RefSeq proteinWP_055146852.1
Context group ID
GCF_001405235::NZ_CZBS01000004.1::G00015Context members
ARA40_RS06250
Partner locus tags
ARA40_RS06250
Partner old locus tags
ERS852424_01270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055146852.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS06250Primary locus identifier stored in the genes table.
Old locus tagERS852424_01270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000004.1Sequence record reported by the local genomic context database.
Genomic interval243 502-246 681 nt3 180 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span243 502-246 681 ntGCF_001405235::NZ_CZBS01000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000004.1All displayed genes belong to this local TCS context.
Neighborhood span243 502-246 681 nt3 180 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
243 502 nt246 681 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA40_RS06250GCF_001405235#ARA40_RS06250
HKHybridCurrent focus
243 502-246 681 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS06250The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0253054
Simplified PFAM architecture for HKOC_0253054
PFAM domain coverage: 455 / 1059 aa (43.0%)
1 aa1059 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[198-349] | HisKA[672-738] | HATPase_c[785-901] | Response_reg[934-1052]
- Domain count: 4
- Matched identifier: HKOC_0253054
- Positioned domains: GGDEF 198-349 ; HisKA 672-738 ; HATPase_c 785-901 ; Response_reg 934-1052
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS06250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key