1 Response_reg#1
3-115 aa · 113 aa · 22.2% of protein
Raw token
Response_reg:3:4.32e-26:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS05640
Response regulator, unclassified
[Ruminococcus] torques · GCF_001405235
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405235#ARA40_RS05640Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 509 aa (37.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-453 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:412:0.00000156:453:42:423 HTH_AraC#3
466-503 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:466:0.00000254:503:38:42- Raw architecture: Response_reg:3:4.32e-26:115:113:111#HTH_AraC:412:0.00000156:453:42:42#HTH_AraC:466:0.00000254:503:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405235::NZ_CZBS01000004.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108828-110357Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01148RefSeq proteinWP_055146603.1
Context group ID
GCF_001405235::NZ_CZBS01000004.1::G00014Context members
ARA40_RS05640
Partner locus tags
ARA40_RS05640
Partner old locus tags
ERS852424_01148
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055146603.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS05640Primary locus identifier stored in the genes table.
Old locus tagERS852424_01148Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000004.1Sequence record reported by the local genomic context database.
Genomic interval108 828-110 357 nt1 530 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 828-110 357 ntGCF_001405235::NZ_CZBS01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000004.1All displayed genes belong to this local TCS context.
Neighborhood span108 828-110 357 nt1 530 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 828 nt110 357 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA40_RS05640GCF_001405235#ARA40_RS05640
RRunclassifiedCurrent focus
108 828-110 357 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS05640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147416
Simplified PFAM architecture for RROC_0147416
PFAM domain coverage: 191 / 509 aa (37.5%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[426-503]
- Domain count: 2
- Matched identifier: RROC_0147416
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 426-503 ; HTH_18 426-503
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS05640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key