1 Response_reg#1
3-117 aa · 115 aa · 48.1% of protein
Raw token
Response_reg:3:1.22e-17:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS04990
Response regulator LytTR family
[Ruminococcus] torques · GCF_001405235
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405235#ARA40_RS04990Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 239 aa (85.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-230 aa · 90 aa · 37.7% of protein
Raw token
LytTR:141:0.000000000638:230:95:98- Raw architecture: Response_reg:3:1.22e-17:117:117:111#LytTR:141:0.000000000638:230:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405235::NZ_CZBS01000003.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span237447-238166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_01015RefSeq proteinWP_055146314.1
Context group ID
GCF_001405235::NZ_CZBS01000003.1::G00010Context members
ARA40_RS04990
Partner locus tags
ARA40_RS04990
Partner old locus tags
ERS852424_01015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055146314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS04990Primary locus identifier stored in the genes table.
Old locus tagERS852424_01015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000003.1Sequence record reported by the local genomic context database.
Genomic interval237 447-238 166 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span237 447-238 166 ntGCF_001405235::NZ_CZBS01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span237 447-238 166 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
237 447 nt238 166 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA40_RS04990GCF_001405235#ARA40_RS04990
RRLytTRCurrent focus
237 447-238 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS04990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0908911
Simplified PFAM architecture for RROC_0908911
PFAM domain coverage: 198 / 239 aa (82.8%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[9-116] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0908911
- Positioned domains: Response_reg 9-116 ; Response_reg 9-116 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS04990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key