1 Response_reg#1
5-111 aa · 107 aa · 49.3% of protein
Raw token
Response_reg:5:2.9e-27:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS03980
Response regulator OmpR family
[Ruminococcus] torques · GCF_001405235
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS03980Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 217 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-215 aa · 74 aa · 34.1% of protein
Raw token
Trans_reg_C:142:1.92e-25:215:77:77- Raw architecture: Response_reg:5:2.9e-27:111:109:111#Trans_reg_C:142:1.92e-25:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000003.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29796-31371Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_00810RefSeq proteinWP_055145964.1
Context group ID
GCF_001405235::NZ_CZBS01000003.1::G00008Context members
ARA40_RS03975ARA40_RS03980
Partner locus tags
ARA40_RS03975ARA40_RS03980
Partner old locus tags
ERS852424_00809ERS852424_00810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055145964.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS03980Primary locus identifier stored in the genes table.
Old locus tagERS852424_00810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000003.1Sequence record reported by the local genomic context database.
Genomic interval30 718-31 371 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 796-31 371 ntGCF_001405235::NZ_CZBS01000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span29 796-31 371 nt1 576 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 796 nt31 371 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS03975GCF_001405235#ARA40_RS03975
HKClassic
29 796-30 716 nt · Reverse (-)
ARA40_RS03980GCF_001405235#ARA40_RS03980
RROmpRCurrent focus
30 718-31 371 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS03980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1850682
Simplified PFAM architecture for RROC_1850682
PFAM domain coverage: 182 / 217 aa (83.9%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[142-215]
- Domain count: 2
- Matched identifier: RROC_1850682
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 142-215 ; Trans_reg_C 142-215
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS03980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key