1 KdpD#1
24-232 aa · 209 aa · 23.2% of protein
Raw token
KdpD:24:1.14e-133:232:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA40_RS01090
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405235
ClassHKTypeClassicLength899 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405235#ARA40_RS01090Stable P2CS identifier used across views.
GenomeGCF_001405235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length899 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 899 aa (43.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa899 aa
Domain-by-domain annotation3 items
2 HisKA#2
671-738 aa · 68 aa · 7.6% of protein
Raw token
HisKA:671:0.00000000000847:738:68:643 HATPase_c#3
782-894 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:782:2.15e-29:894:113:109- Raw architecture: KdpD:24:1.14e-133:232:209:210#HisKA:671:0.00000000000847:738:68:64#HATPase_c:782:2.15e-29:894:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405235::NZ_CZBS01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span233146-236539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852424_00217RefSeq proteinWP_055144826.1
Context group ID
GCF_001405235::NZ_CZBS01000001.1::G00001Context members
ARA40_RS01085ARA40_RS01090
Partner locus tags
ARA40_RS01085ARA40_RS01090
Partner old locus tags
ERS852424_00216ERS852424_00217
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055144826.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA40_RS01090Primary locus identifier stored in the genes table.
Old locus tagERS852424_00217Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBS01000001.1Sequence record reported by the local genomic context database.
Genomic interval233 840-236 539 nt2 700 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span233 146-236 539 ntGCF_001405235::NZ_CZBS01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405235::NZ_CZBS01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span233 146-236 539 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
233 146 nt236 539 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA40_RS01085GCF_001405235#ARA40_RS01085
RROmpR
233 146-233 847 nt · Reverse (-)
ARA40_RS01090GCF_001405235#ARA40_RS01090
HKClassicCurrent focus
233 840-236 539 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS01090The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0407558
Simplified PFAM architecture for HKOC_0407558
PFAM domain coverage: 493 / 899 aa (54.8%)
1 aa899 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[404-509] | HisKA[671-738] | HATPase_c[783-892]
- Domain count: 4
- Matched identifier: HKOC_0407558
- Positioned domains: KdpD 24-232 ; DUF4118 404-509 ; HisKA 671-738 ; HATPase_c 783-892
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS01090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405235
Assembly13414_6#51 · Scaffoldhaploid
Genome composition2 756 866 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key