1 Response_reg#1
5-114 aa · 110 aa · 44.5% of protein
Raw token
Response_reg:5:0.00000000000707:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB31_RS01095
Response regulator LytTR family
Coprococcus eutactus · GCF_001405115
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405115#ARB31_RS01095Stable P2CS identifier used across views.
GenomeGCF_001405115Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 247 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-233 aa · 88 aa · 35.6% of protein
Raw token
LytTR:146:0.0000000000164:233:93:98- Raw architecture: Response_reg:5:0.00000000000707:114:112:111#LytTR:146:0.0000000000164:233:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405115::NZ_CYYE01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span255599-256342Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852445_00233RefSeq proteinWP_022217456.1
Context group ID
GCF_001405115::NZ_CYYE01000001.1::G00004Context members
ARB31_RS01095
Partner locus tags
ARB31_RS01095
Partner old locus tags
ERS852445_00233
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022217456.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1I8C2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1I8C2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB31_RS01095Primary locus identifier stored in the genes table.
Old locus tagERS852445_00233Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYE01000001.1Sequence record reported by the local genomic context database.
Genomic interval255 599-256 342 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span255 599-256 342 ntGCF_001405115::NZ_CYYE01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405115::NZ_CYYE01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span255 599-256 342 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
255 599 nt256 342 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB31_RS01095GCF_001405115#ARB31_RS01095
RRLytTRCurrent focus
255 599-256 342 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405115#ARB31_RS01095The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0757786
Simplified PFAM architecture for RROC_0757786
PFAM domain coverage: 205 / 247 aa (83.0%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-120] | LytTR[146-234]
- Domain count: 2
- Matched identifier: RROC_0757786
- Positioned domains: Response_reg 5-120 ; Response_reg 5-120 ; LytTR 146-234 ; LytTR 146-234
Cluster members and taxonomy
Representative gene: GCF_001405115#ARB31_RS01095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001405115
Assembly13414_6#72 · Scaffoldhaploid
Genome composition3 149 592 bp · 44,0% GCCoprococcus eutactus
Signal transduction countsGenes 79 · HK 40 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key