1 HisKA#1
222-287 aa · 66 aa · 8.7% of protein
Raw token
HisKA:222:1.13e-17:287:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB31_RS00345
Histidine kinase, Unorthodox
Coprococcus eutactus · GCF_001405115
ClassHKTypeUnorthodoxLength755 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405115#ARB31_RS00345Stable P2CS identifier used across views.
GenomeGCF_001405115Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length755 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage382 / 755 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa755 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
334-448 aa · 115 aa · 15.2% of protein
Raw token
HATPase_c:334:2.07e-31:448:115:1093 Response_reg#3
486-599 aa · 114 aa · 15.1% of protein
Raw token
Response_reg:486:2.87e-21:599:114:1114 Hpt#4
662-748 aa · 87 aa · 11.5% of protein
Raw token
Hpt:662:0.00000000134:748:87:84- Raw architecture: HisKA:222:1.13e-17:287:66:64#HATPase_c:334:2.07e-31:448:115:109#Response_reg:486:2.87e-21:599:114:111#Hpt:662:0.00000000134:748:87:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405115::NZ_CYYE01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75619-79807Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852445_00079RefSeq proteinWP_055271918.1
Context group ID
GCF_001405115::NZ_CYYE01000001.1::G00002Context members
ARB31_RS00345ARB31_RS00350
Partner locus tags
ARB31_RS00345ARB31_RS00350
Partner old locus tags
ERS852445_00079ERS852445_00080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055271918.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB31_RS00345Primary locus identifier stored in the genes table.
Old locus tagERS852445_00079Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYE01000001.1Sequence record reported by the local genomic context database.
Genomic interval75 619-77 886 nt2 268 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 619-79 807 ntGCF_001405115::NZ_CYYE01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405115::NZ_CYYE01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span75 619-79 807 nt4 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 619 nt79 807 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB31_RS00345GCF_001405115#ARB31_RS00345
HKUnorthodoxCurrent focus
75 619-77 886 nt · Reverse (-)
ARB31_RS00350GCF_001405115#ARB31_RS00350
RRRpfG
77 906-79 807 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405115#ARB31_RS00345The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0656469
Simplified PFAM architecture for HKOC_0656469
PFAM domain coverage: 352 / 755 aa (46.6%)
1 aa755 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[222-287] | HATPase_c[334-450] | Response_reg[486-598] | Hpt[674-729]
- Domain count: 4
- Matched identifier: HKOC_0656469
- Positioned domains: HisKA 222-287 ; HATPase_c 334-450 ; Response_reg 486-598 ; Hpt 674-729
Cluster members and taxonomy
Representative gene: GCF_001405115#ARB31_RS00345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001405115
Assembly13414_6#72 · Scaffoldhaploid
Genome composition3 149 592 bp · 44,0% GCCoprococcus eutactus
Signal transduction countsGenes 79 · HK 40 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key