1 Response_reg#1
14-116 aa · 103 aa · 44.8% of protein
Raw token
Response_reg:14:0.000000249:116:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA38_RS00935
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_001405035
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405035#ARA38_RS00935Stable P2CS identifier used across views.
GenomeGCF_001405035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 230 aa (67.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-221 aa · 53 aa · 23.0% of protein
Raw token
HTH_LUXR:169:0.00000000000023:221:53:58- Raw architecture: Response_reg:14:0.000000249:116:103:111#HTH_LUXR:169:0.00000000000023:221:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405035::NZ_CYZC01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span248303-248995Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852455_00186RefSeq proteinWP_055062949.1
Context group ID
GCF_001405035::NZ_CYZC01000001.1::G00002Context members
ARA38_RS00935
Partner locus tags
ARA38_RS00935
Partner old locus tags
ERS852455_00186
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055062949.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3IY18Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3IY18_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA38_RS00935Primary locus identifier stored in the genes table.
Old locus tagERS852455_00186Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZC01000001.1Sequence record reported by the local genomic context database.
Genomic interval248 303-248 995 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span248 303-248 995 ntGCF_001405035::NZ_CYZC01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405035::NZ_CYZC01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span248 303-248 995 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 303 nt248 995 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA38_RS00935GCF_001405035#ARA38_RS00935
RRNarLCurrent focus
248 303-248 995 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405035#ARA38_RS00935The current gene is the representative for this cluster.
PFAM architectureGerE1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1205223
Simplified PFAM architecture for RROC_1205223
PFAM domain coverage: 54 / 230 aa (23.5%)
1 aa230 aa
GerE
- Simplified architecture: GerE
- Raw architecture: GerE[168-221]
- Domain count: 1
- Matched identifier: RROC_1205223
- Positioned domains: GerE 168-221 ; GerE 168-221
Cluster members and taxonomy
Representative gene: GCF_001405035#ARA38_RS00935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_001405035
Assembly13470_2#59 · Scaffoldhaploid
Genome composition2 303 871 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 10 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key