1 Response_reg#1
5-117 aa · 113 aa · 53.6% of protein
Raw token
Response_reg:5:5.43e-28:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS08975
Response regulator NarL family
Clostridium paraputrificum · GCF_001404795
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404795#ARB71_RS08975Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 211 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-204 aa · 54 aa · 25.6% of protein
Raw token
HTH_LUXR:151:2.13e-19:204:54:58- Raw architecture: Response_reg:5:5.43e-28:117:113:111#HTH_LUXR:151:2.13e-19:204:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404795::NZ_CYZW01000004.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span346045-346680Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_01852RefSeq proteinWP_055184206.1
Context group ID
GCF_001404795::NZ_CYZW01000004.1::G00020Context members
ARB71_RS08975
Partner locus tags
ARB71_RS08975
Partner old locus tags
ERS852472_01852
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055184206.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DMP2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DMP2_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS08975Primary locus identifier stored in the genes table.
Old locus tagERS852472_01852Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000004.1Sequence record reported by the local genomic context database.
Genomic interval346 045-346 680 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span346 045-346 680 ntGCF_001404795::NZ_CYZW01000004.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000004.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span346 045-346 680 nt636 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
346 045 nt346 680 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB71_RS08975GCF_001404795#ARB71_RS08975
RRNarLCurrent focus
346 045-346 680 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS08975The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2005195
Simplified PFAM architecture for RROC_2005195
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[150-204]
- Domain count: 2
- Matched identifier: RROC_2005195
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 150-204 ; GerE 150-204
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS08975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key