1 Response_reg#1
4-108 aa · 105 aa · 45.1% of protein
Raw token
Response_reg:4:3.33e-30:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS07825
Response regulator OmpR family
Clostridium paraputrificum · GCF_001404795
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404795#ARB71_RS07825Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 233 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:149:6.61e-34:225:77:77- Raw architecture: Response_reg:4:3.33e-30:108:106:111#Trans_reg_C:149:6.61e-34:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404795::NZ_CYZW01000004.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104483-106547Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_01616RefSeq proteinWP_242858078.1
Context group ID
GCF_001404795::NZ_CYZW01000004.1::G00017Context members
ARB71_RS07820ARB71_RS07825
Partner locus tags
ARB71_RS07820ARB71_RS07825
Partner old locus tags
ERS852472_01615ERS852472_01616
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242858078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS07825Primary locus identifier stored in the genes table.
Old locus tagERS852472_01616Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000004.1Sequence record reported by the local genomic context database.
Genomic interval105 846-106 547 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 483-106 547 ntGCF_001404795::NZ_CYZW01000004.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000004.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span104 483-106 547 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 483 nt106 547 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB71_RS07820GCF_001404795#ARB71_RS07820
HKClassic
104 483-105 856 nt · Reverse (-)
ARB71_RS07825GCF_001404795#ARB71_RS07825
RROmpRCurrent focus
105 846-106 547 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS07825The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1085135
Simplified PFAM architecture for RROC_1085135
PFAM domain coverage: 182 / 233 aa (78.1%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1085135
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS07825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key