1 HisKA_3#1
185-251 aa · 67 aa · 17.5% of protein
Raw token
HisKA_3:185:2.43e-18:251:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS06080
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001404795
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404795#ARB71_RS06080Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 383 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
295-381 aa · 87 aa · 22.7% of protein
Raw token
HATPase_c:295:0.0000000000000188:381:104:109- Raw architecture: HisKA_3:185:2.43e-18:251:67:68#HATPase_c:295:0.0000000000000188:381:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404795::NZ_CYZW01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span125115-126911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_01259RefSeq proteinWP_027097371.1
Context group ID
GCF_001404795::NZ_CYZW01000003.1::G00010Context members
ARB71_RS06080ARB71_RS06085
Partner locus tags
ARB71_RS06080ARB71_RS06085
Partner old locus tags
ERS852472_01259ERS852472_01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097371.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BT48Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BT48_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS06080Primary locus identifier stored in the genes table.
Old locus tagERS852472_01259Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000003.1Sequence record reported by the local genomic context database.
Genomic interval125 115-126 266 nt1 152 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 115-126 911 ntGCF_001404795::NZ_CYZW01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span125 115-126 911 nt1 797 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 115 nt126 911 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB71_RS06080GCF_001404795#ARB71_RS06080
HKClassicCurrent focus
125 115-126 266 nt · Forward (+)
ARB71_RS06085GCF_001404795#ARB71_RS06085
RRNarL
126 270-126 911 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0103930Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2582354
Simplified PFAM architecture for HKOC_2582354
PFAM domain coverage: 155 / 383 aa (40.5%)
1 aa383 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[185-251] | HATPase_c[293-380]
- Domain count: 2
- Matched identifier: HKOC_2582354
- Positioned domains: HisKA_3 185-251 ; HATPase_c 293-380
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0103930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key