1 HisKA#1
87-152 aa · 66 aa · 21.2% of protein
Raw token
HisKA:87:0.0000000000000365:152:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS05480
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001404795
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404795#ARB71_RS05480Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 311 aa (56.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-307 aa · 110 aa · 35.4% of protein
Raw token
HATPase_c:198:7.6e-24:307:110:109- Raw architecture: HisKA:87:0.0000000000000365:152:66:64#HATPase_c:198:7.6e-24:307:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404795::NZ_CYZW01000002.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span438432-440062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_01137RefSeq proteinWP_055253649.1
Context group ID
GCF_001404795::NZ_CYZW01000002.1::G00009Context members
ARB71_RS05475ARB71_RS05480
Partner locus tags
ARB71_RS05475ARB71_RS05480
Partner old locus tags
ERS852472_01136ERS852472_01137
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055253649.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS05480Primary locus identifier stored in the genes table.
Old locus tagERS852472_01137Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000002.1Sequence record reported by the local genomic context database.
Genomic interval439 127-440 062 nt936 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span438 432-440 062 ntGCF_001404795::NZ_CYZW01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span438 432-440 062 nt1 631 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
438 432 nt440 062 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB71_RS05475GCF_001404795#ARB71_RS05475
RROmpR
438 432-439 127 nt · Forward (+)
ARB71_RS05480GCF_001404795#ARB71_RS05480
HKClassicCurrent focus
439 127-440 062 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS05480The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876674
Simplified PFAM architecture for HKOC_2876674
PFAM domain coverage: 175 / 311 aa (56.3%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-152] | HATPase_c[199-307]
- Domain count: 2
- Matched identifier: HKOC_2876674
- Positioned domains: HisKA 87-152 ; HATPase_c 199-307
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS05480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key