1 Response_reg#1
5-115 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:5:6.16e-38:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS03555
Response regulator OmpR family
Clostridium paraputrificum · GCF_001404795
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404795#ARB71_RS03555Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:1.93e-34:228:77:77- Raw architecture: Response_reg:5:6.16e-38:115:112:111#Trans_reg_C:152:1.93e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404795::NZ_CYZW01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33498-35621Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_00736RefSeq proteinWP_027099369.1
Context group ID
GCF_001404795::NZ_CYZW01000002.1::G00006Context members
ARB71_RS03555ARB71_RS03560
Partner locus tags
ARB71_RS03555ARB71_RS03560
Partner old locus tags
ERS852472_00736ERS852472_00737
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027099369.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZWW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZWW8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS03555Primary locus identifier stored in the genes table.
Old locus tagERS852472_00736Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000002.1Sequence record reported by the local genomic context database.
Genomic interval33 498-34 193 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 498-35 621 ntGCF_001404795::NZ_CYZW01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span33 498-35 621 nt2 124 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 498 nt35 621 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB71_RS03555GCF_001404795#ARB71_RS03555
RROmpRCurrent focus
33 498-34 193 nt · Forward (+)
ARB71_RS03560GCF_001404795#ARB71_RS03560
HKClassic
34 200-35 621 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0115480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1159964
Simplified PFAM architecture for RROC_1159964
PFAM domain coverage: 188 / 231 aa (81.4%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1159964
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0115480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key