1 HAMP#1
144-211 aa · 68 aa · 15.4% of protein
Raw token
HAMP:144:0.00000017:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS02315
Histidine kinase, Classic
Clostridium paraputrificum · GCF_001404795
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404795#ARB71_RS02315Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 442 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-296 aa · 66 aa · 14.9% of protein
Raw token
HisKA:231:0.000000265:296:66:643 HATPase_c#3
342-438 aa · 97 aa · 21.9% of protein
Raw token
HATPase_c:342:0.00000000000519:438:105:109- Raw architecture: HAMP:144:0.00000017:211:68:69#HisKA:231:0.000000265:296:66:64#HATPase_c:342:0.00000000000519:438:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404795::NZ_CYZW01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span505916-507897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_00481RefSeq proteinWP_055253394.1
Context group ID
GCF_001404795::NZ_CYZW01000001.1::G00003Context members
ARB71_RS02310ARB71_RS02315
Partner locus tags
ARB71_RS02310ARB71_RS02315
Partner old locus tags
ERS852472_00480ERS852472_00481
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055253394.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS02315Primary locus identifier stored in the genes table.
Old locus tagERS852472_00481Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000001.1Sequence record reported by the local genomic context database.
Genomic interval506 569-507 897 nt1 329 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span505 916-507 897 ntGCF_001404795::NZ_CYZW01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span505 916-507 897 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
505 916 nt507 897 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB71_RS02310GCF_001404795#ARB71_RS02310
RROmpR
505 916-506 572 nt · Forward (+)
ARB71_RS02315GCF_001404795#ARB71_RS02315
HKClassicCurrent focus
506 569-507 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS02315The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2052560
Simplified PFAM architecture for HKOC_2052560
PFAM domain coverage: 161 / 442 aa (36.4%)
1 aa442 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-295] | HATPase_c[342-438]
- Domain count: 2
- Matched identifier: HKOC_2052560
- Positioned domains: HisKA 232-295 ; HATPase_c 342-438
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS02315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key