1 Response_reg#1
7-110 aa · 104 aa · 20.8% of protein
Raw token
Response_reg:7:1.35e-27:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS18420
Response regulator RpfG family
Blautia obeum · GCF_001404775
ClassRRTypeRpfGLength499 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404775#ARA22_RS18420Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 499 aa (42.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation2 items
2 HD#2
193-299 aa · 107 aa · 21.4% of protein
Raw token
HD:193:0.0000000000000202:299:107:110- Raw architecture: Response_reg:7:1.35e-27:110:105:111#HD:193:0.0000000000000202:299:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404775::NZ_CZBP01000046.1::G00063
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7296-8795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_03713RefSeq proteinWP_055060641.1
Context group ID
GCF_001404775::NZ_CZBP01000046.1::G00063Context members
ARA22_RS18420
Partner locus tags
ARA22_RS18420
Partner old locus tags
ERS852569_03713
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055060641.1Primary protein accession used for annex mappings.
UniProt accessionA0A174W813Primary UniProt accession resolved in the annex database.
UniProt IDA0A174W813_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS18420Primary locus identifier stored in the genes table.
Old locus tagERS852569_03713Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000046.1Sequence record reported by the local genomic context database.
Genomic interval7 296-8 795 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 296-8 795 ntGCF_001404775::NZ_CZBP01000046.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000046.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000046.1All displayed genes belong to this local TCS context.
Neighborhood span7 296-8 795 nt1 500 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 296 nt8 795 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA22_RS18420GCF_001404775#ARA22_RS18420
RRRpfGCurrent focus
7 296-8 795 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS18420The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0159068
Simplified PFAM architecture for RROC_0159068
PFAM domain coverage: 248 / 499 aa (49.7%)
1 aa499 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[184-320]
- Domain count: 2
- Matched identifier: RROC_0159068
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 184-320 ; HD_5 184-320
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS18420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key