1 HAMP#1
307-385 aa · 79 aa · 12.9% of protein
Raw token
HAMP:307:0.000000168:385:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS09550
Histidine kinase, Classic
Blautia obeum · GCF_001404775
ClassHKTypeClassicLength614 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404775#ARA22_RS09550Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length614 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 614 aa (42.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa614 aa
Domain-by-domain annotation3 items
2 His_kinase#2
400-479 aa · 80 aa · 13.0% of protein
Raw token
His_kinase:400:1.2e-23:479:80:803 HATPase_c#3
499-600 aa · 102 aa · 16.6% of protein
Raw token
HATPase_c:499:0.00000000000325:600:104:109- Raw architecture: HAMP:307:0.000000168:385:79:69#His_kinase:400:1.2e-23:479:80:80#HATPase_c:499:0.00000000000325:600:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404775::NZ_CZBP01000014.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2496-5919Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01939RefSeq proteinWP_020993405.1
Context group ID
GCF_001404775::NZ_CZBP01000014.1::G00029Context members
ARA22_RS09545ARA22_RS09550
Partner locus tags
ARA22_RS09545ARA22_RS09550
Partner old locus tags
ERS852569_01938ERS852569_01939
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020993405.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TRI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TRI6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS09550Primary locus identifier stored in the genes table.
Old locus tagERS852569_01939Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000014.1Sequence record reported by the local genomic context database.
Genomic interval4 075-5 919 nt1 845 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 496-5 919 ntGCF_001404775::NZ_CZBP01000014.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000014.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000014.1All displayed genes belong to this local TCS context.
Neighborhood span2 496-5 919 nt3 424 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 496 nt5 919 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA22_RS09545GCF_001404775#ARA22_RS09545
RRunclassified
2 496-4 100 nt · Reverse (-)
ARA22_RS09550GCF_001404775#ARA22_RS09550
HKClassicCurrent focus
4 075-5 919 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667985#I4V49_RS15500Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0983335
Simplified PFAM architecture for HKOC_0983335
PFAM domain coverage: 181 / 617 aa (29.3%)
1 aa617 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[404-481] | HATPase_c[502-604]
- Domain count: 2
- Matched identifier: HKOC_0983335
- Positioned domains: His_kinase 404-481 ; HATPase_c 502-604
Cluster members and taxonomy
Representative gene: GCF_015667985#I4V49_RS15500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key