1 Response_reg#1
41-142 aa · 102 aa · 37.0% of protein
Raw token
Response_reg:41:0.00000000000114:142:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA24_RS04690
Response regulator LytTR family
Blautia wexlerae · GCF_001404755
ClassRRTypeLytTRLength276 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404755#ARA24_RS04690Stable P2CS identifier used across views.
GenomeGCF_001404755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 276 aa (69.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation2 items
2 LytTR#2
174-264 aa · 91 aa · 33.0% of protein
Raw token
LytTR:174:6.1e-20:264:97:98- Raw architecture: Response_reg:41:0.00000000000114:142:104:111#LytTR:174:6.1e-20:264:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404755::NZ_CYZN01000005.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span98744-99574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852478_00943RefSeq proteinWP_242859368.1
Context group ID
GCF_001404755::NZ_CYZN01000005.1::G00020Context members
ARA24_RS04690
Partner locus tags
ARA24_RS04690
Partner old locus tags
ERS852478_00943
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242859368.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA24_RS04690Primary locus identifier stored in the genes table.
Old locus tagERS852478_00943Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZN01000005.1Sequence record reported by the local genomic context database.
Genomic interval98 744-99 574 nt831 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span98 744-99 574 ntGCF_001404755::NZ_CYZN01000005.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404755::NZ_CYZN01000005.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZN01000005.1All displayed genes belong to this local TCS context.
Neighborhood span98 744-99 574 nt831 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 744 nt99 574 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA24_RS04690GCF_001404755#ARA24_RS04690
RRLytTRCurrent focus
98 744-99 574 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404755#ARA24_RS04690The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0603144
Simplified PFAM architecture for RROC_0603144
PFAM domain coverage: 200 / 276 aa (72.5%)
1 aa276 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[40-149] | LytTR[175-264]
- Domain count: 2
- Matched identifier: RROC_0603144
- Positioned domains: Response_reg 40-149 ; Response_reg 40-149 ; LytTR 175-264 ; LytTR 175-264
Cluster members and taxonomy
Representative gene: GCF_001404755#ARA24_RS04690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404755
Assembly13470_2#82 · Scaffoldhaploid
Genome composition4 111 435 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 115 · HK 54 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key