1 HisKA#1
472-538 aa · 67 aa · 7.7% of protein
Raw token
HisKA:472:2.18e-16:538:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA24_RS03950
Histidine kinase, Hybrid
Blautia wexlerae · GCF_001404755
ClassHKTypeHybridLength873 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404755#ARA24_RS03950Stable P2CS identifier used across views.
GenomeGCF_001404755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length873 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 873 aa (34.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa873 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
585-699 aa · 115 aa · 13.2% of protein
Raw token
HATPase_c:585:9.6e-30:699:115:1093 Response_reg#3
740-857 aa · 118 aa · 13.5% of protein
Raw token
Response_reg:740:3.58e-30:857:118:111- Raw architecture: HisKA:472:2.18e-16:538:67:64#HATPase_c:585:9.6e-30:699:115:109#Response_reg:740:3.58e-30:857:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404755::NZ_CYZN01000004.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span160983-163604Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852478_00789RefSeq proteinWP_055199799.1
Context group ID
GCF_001404755::NZ_CYZN01000004.1::G00018Context members
ARA24_RS03950
Partner locus tags
ARA24_RS03950
Partner old locus tags
ERS852478_00789
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055199799.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YVL4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YVL4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA24_RS03950Primary locus identifier stored in the genes table.
Old locus tagERS852478_00789Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZN01000004.1Sequence record reported by the local genomic context database.
Genomic interval160 983-163 604 nt2 622 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span160 983-163 604 ntGCF_001404755::NZ_CYZN01000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404755::NZ_CYZN01000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZN01000004.1All displayed genes belong to this local TCS context.
Neighborhood span160 983-163 604 nt2 622 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 983 nt163 604 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA24_RS03950GCF_001404755#ARA24_RS03950
HKHybridCurrent focus
160 983-163 604 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404755#ARA24_RS03950The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0455045
Simplified PFAM architecture for HKOC_0455045
PFAM domain coverage: 298 / 873 aa (34.1%)
1 aa873 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[473-538] | HATPase_c[586-700] | Response_reg[740-856]
- Domain count: 3
- Matched identifier: HKOC_0455045
- Positioned domains: HisKA 473-538 ; HATPase_c 586-700 ; Response_reg 740-856
Cluster members and taxonomy
Representative gene: GCF_001404755#ARA24_RS03950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404755
Assembly13470_2#82 · Scaffoldhaploid
Genome composition4 111 435 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 115 · HK 54 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key