1 HAMP#1
317-386 aa · 70 aa · 11.5% of protein
Raw token
HAMP:317:0.00000000297:386:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA24_RS01495
Histidine kinase, Classic
Blautia wexlerae · GCF_001404755
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404755#ARA24_RS01495Stable P2CS identifier used across views.
GenomeGCF_001404755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 607 aa (42.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 His_kinase#2
401-480 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:401:3.49e-26:480:80:803 HATPase_c#3
500-605 aa · 106 aa · 17.5% of protein
Raw token
HATPase_c:500:0.0000000000000599:605:109:109- Raw architecture: HAMP:317:0.00000000297:386:71:69#His_kinase:401:3.49e-26:480:80:80#HATPase_c:500:0.0000000000000599:605:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404755::NZ_CYZN01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55554-58954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852478_00295RefSeq proteinWP_055199554.1
Context group ID
GCF_001404755::NZ_CYZN01000002.1::G00006Context members
ARA24_RS01495ARA24_RS01500
Partner locus tags
ARA24_RS01495ARA24_RS01500
Partner old locus tags
ERS852478_00295ERS852478_00296
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055199554.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XEC8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XEC8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA24_RS01495Primary locus identifier stored in the genes table.
Old locus tagERS852478_00295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZN01000002.1Sequence record reported by the local genomic context database.
Genomic interval55 554-57 377 nt1 824 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 554-58 954 ntGCF_001404755::NZ_CYZN01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404755::NZ_CYZN01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span55 554-58 954 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 554 nt58 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA24_RS01495GCF_001404755#ARA24_RS01495
HKClassicCurrent focus
55 554-57 377 nt · Reverse (-)
ARA24_RS01500GCF_001404755#ARA24_RS01500
RRunclassified
57 395-58 954 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404755#ARA24_RS01495The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1019175
Simplified PFAM architecture for HKOC_1019175
PFAM domain coverage: 184 / 607 aa (30.3%)
1 aa607 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[401-479] | HATPase_c[500-604]
- Domain count: 2
- Matched identifier: HKOC_1019175
- Positioned domains: His_kinase 401-479 ; HATPase_c 500-604
Cluster members and taxonomy
Representative gene: GCF_001404755#ARA24_RS01495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404755
Assembly13470_2#82 · Scaffoldhaploid
Genome composition4 111 435 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 115 · HK 54 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key