1 HAMP#1
280-349 aa · 70 aa · 12.2% of protein
Raw token
HAMP:280:0.000000000000285:349:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS16305
Histidine kinase, Classic
Blautia wexlerae · GCF_001404735
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS16305Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 576 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
364-442 aa · 79 aa · 13.7% of protein
Raw token
His_kinase:364:7.88e-30:442:80:803 HATPase_c#3
461-564 aa · 104 aa · 18.1% of protein
Raw token
HATPase_c:461:0.000000000000143:564:108:109- Raw architecture: HAMP:280:0.000000000000285:349:70:69#His_kinase:364:7.88e-30:442:80:80#HATPase_c:461:0.000000000000143:564:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000045.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28103-30722Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_03307RefSeq proteinWP_172678345.1
Context group ID
GCF_001404735::NZ_CZAW01000045.1::G00057Context members
ARA71_RS16300ARA71_RS16305
Partner locus tags
ARA71_RS16300ARA71_RS16305
Partner old locus tags
ERS852523_03306ERS852523_03307
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172678345.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS16305Primary locus identifier stored in the genes table.
Old locus tagERS852523_03307Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000045.1Sequence record reported by the local genomic context database.
Genomic interval28 992-30 722 nt1 731 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 103-30 722 ntGCF_001404735::NZ_CZAW01000045.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000045.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000045.1All displayed genes belong to this local TCS context.
Neighborhood span28 103-30 722 nt2 620 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 103 nt30 722 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS16300GCF_001404735#ARA71_RS16300
RRunclassified
28 103-28 933 nt · Forward (+)
ARA71_RS16305GCF_001404735#ARA71_RS16305
HKClassicCurrent focus
28 992-30 722 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS16305The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1183579
Simplified PFAM architecture for HKOC_1183579
PFAM domain coverage: 232 / 576 aa (40.3%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[299-348] | His_kinase[364-442] | HATPase_c[462-564]
- Domain count: 3
- Matched identifier: HKOC_1183579
- Positioned domains: HAMP 299-348 ; His_kinase 364-442 ; HATPase_c 462-564
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS16305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key