1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:1.05e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS11280
Response regulator OmpR family
Blautia wexlerae · GCF_001404735
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS11280Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 32.9% of protein
Raw token
Trans_reg_C:152:1.54e-29:227:76:77- Raw architecture: Response_reg:4:1.05e-36:113:111:111#Trans_reg_C:152:1.54e-29:227:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000023.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30109-33660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_02291RefSeq proteinWP_055151796.1
Context group ID
GCF_001404735::NZ_CZAW01000023.1::G00029Context members
ARA71_RS11280ARA71_RS11285
Partner locus tags
ARA71_RS11280ARA71_RS11285
Partner old locus tags
ERS852523_02291ERS852523_02292
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055151796.1Primary protein accession used for annex mappings.
UniProt accessionA0A174PRN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174PRN3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS11280Primary locus identifier stored in the genes table.
Old locus tagERS852523_02291Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000023.1Sequence record reported by the local genomic context database.
Genomic interval30 109-30 804 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 109-33 660 ntGCF_001404735::NZ_CZAW01000023.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000023.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000023.1All displayed genes belong to this local TCS context.
Neighborhood span30 109-33 660 nt3 552 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 109 nt33 660 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS11280GCF_001404735#ARA71_RS11280
RROmpRCurrent focus
30 109-30 804 nt · Forward (+)
ARA71_RS11285GCF_001404735#ARA71_RS11285
HKClassic
31 003-33 660 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS11280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1162799
Simplified PFAM architecture for RROC_1162799
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1162799
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS11280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key